ERX3297460
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-SEX
male
ArrayExpress-SPECIES
Mus musculus
ENA first public
2019-04-09
ENA last update
2018-03-22
ENA-CHECKLIST
ERC000011
External Id
SAMEA104712163
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2019-04-09T17:04:17Z
INSDC last update
2018-03-22T12:16:53Z
INSDC status
public
Submitter Id
83f0e7b0-276e-11e8-9fed-68b599768938
common name
house mouse
gender
male
sample name
83f0e7b0-276e-11e8-9fed-68b599768938
subject id
1992STDY7388841

Sequenced DNA Library

library_name
NT1345986D
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
4403318
Reads aligned (%)
51.6
Duplicates removed (%)
23.6
Number of peaks
2063 (qval < 1E-05)

mm9

Number of total reads
4403318
Reads aligned (%)
51.5
Duplicates removed (%)
24.1
Number of peaks
2029 (qval < 1E-05)

Base call quality data from DBCLS SRA