ERX3297284
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-SEX
male
ArrayExpress-SPECIES
Mus musculus
ENA first public
2019-04-09
ENA last update
2018-03-22
ENA-CHECKLIST
ERC000011
External Id
SAMEA104712147
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2019-04-09T17:04:17Z
INSDC last update
2018-03-22T12:16:49Z
INSDC status
public
Submitter Id
835c74c2-276e-11e8-9fed-68b599768938
common name
house mouse
gender
male
sample name
835c74c2-276e-11e8-9fed-68b599768938
subject id
1992STDY7388825

Sequenced DNA Library

library_name
NT1345970S
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6803459
Reads aligned (%)
35.8
Duplicates removed (%)
36.2
Number of peaks
1689 (qval < 1E-05)

mm9

Number of total reads
6803459
Reads aligned (%)
35.7
Duplicates removed (%)
36.5
Number of peaks
1675 (qval < 1E-05)

Base call quality data from DBCLS SRA