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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: NA
ATCC
MeSH
RIKEN BRC
ERX3297283
Illumina HiSeq 2500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
No description
Cell type
NA
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-SEX
male
ArrayExpress-SPECIES
Mus musculus
ENA first public
2019-04-09
ENA last update
2018-03-22
ENA-CHECKLIST
ERC000011
External Id
SAMEA104712145
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2019-04-09T17:04:17Z
INSDC last update
2018-03-22T12:16:49Z
INSDC status
public
Submitter Id
835134d6-276e-11e8-9fed-68b599768938
common name
house mouse
gender
male
sample name
835134d6-276e-11e8-9fed-68b599768938
subject id
1992STDY7388823
Sequenced DNA Library
library_name
NT1345968B
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
3058932
Reads aligned (%)
45.6
Duplicates removed (%)
22.5
Number of peaks
98 (qval < 1E-05)
mm9
Number of total reads
3058932
Reads aligned (%)
45.6
Duplicates removed (%)
22.7
Number of peaks
80 (qval < 1E-05)
Base call quality data from
DBCLS SRA