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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: Erythroid progenitors
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX3252073
Illumina HiSeq 2000 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Blood
Cell type
Erythroid progenitors
NA
NA
Attributes by original data submitter
Sample
ENA first public
2020-01-06
ENA last update
2019-03-15
ENA-CHECKLIST
ERC000011
External Id
SAMEA5424919
INSDC center alias
ERASMUS MC
INSDC center name
ERASMUS MC
INSDC first public
2020-01-06T04:04:25Z
INSDC last update
2019-03-15T13:58:31Z
INSDC status
public
Submitter Id
I18-1294-02-hudep_1_pro_2_S32_L002
cell type
Erythroid progenitor
common name
human
dev stage
adult
sample name
I18-1294-02-hudep_1_pro_2_S32_L002
tissue type
Peripheral blood
Sequenced DNA Library
library_name
I18-1294
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera Rapid:PE 50
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
7824549
Reads aligned (%)
93.3
Duplicates removed (%)
59.4
Number of peaks
953 (qval < 1E-05)
hg19
Number of total reads
7824549
Reads aligned (%)
93.2
Duplicates removed (%)
59.5
Number of peaks
960 (qval < 1E-05)
Base call quality data from
DBCLS SRA