ERX3252071
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Erythroid progenitors
NA
NA

Attributes by original data submitter

Sample

ENA first public
2020-01-06
ENA last update
2019-03-15
ENA-CHECKLIST
ERC000011
External Id
SAMEA5424917
INSDC center alias
ERASMUS MC
INSDC center name
ERASMUS MC
INSDC first public
2020-01-06T04:04:25Z
INSDC last update
2019-03-15T13:58:31Z
INSDC status
public
Submitter Id
I18-1294-01-hudep_1_pro_1_S31_L002
cell type
Erythroid progenitor
common name
human
dev stage
adult
sample name
I18-1294-01-hudep_1_pro_1_S31_L002
tissue type
Peripheral blood

Sequenced DNA Library

library_name
I18-1294
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera Rapid:PE 50

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7441875
Reads aligned (%)
92.4
Duplicates removed (%)
59.3
Number of peaks
935 (qval < 1E-05)

hg19

Number of total reads
7441875
Reads aligned (%)
92.2
Duplicates removed (%)
59.4
Number of peaks
947 (qval < 1E-05)

Base call quality data from DBCLS SRA