Antigen

Antigen Class

No description

Antigen

NA

Cell type

Cell type Class

Kidney

Cell type

Kidney

MeSH Description

Body organ that filters blood for the secretion of URINE and that regulates ion concentrations.

Sample

ENA first public

2013-10-17

ENA last update

2018-03-08

ENA-CHECKLIST

ERC000011

External Id

SAMEA2220175

INSDC center alias

UNC-ChapelHill

INSDC center name

University of North Carolina - Chapel Hill

INSDC first public

2013-10-17T17:02:08Z

INSDC last update

2018-03-08T16:47:38Z

INSDC status

public

Submitter Id

E-MTAB-1936:nMD719791_ChIP

broker name

ArrayExpress

common name

human

disease

normal

individual

nMD719791

organism part

kidney

sample name

E-MTAB-1936:nMD719791_ChIP

specimen with known storage state

frozen specimen

Sequenced DNA Library

library_name

nMD719791_ChIP

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Tumors and normal kidney stored at -80C. FAIRE was performed as described in Simon et al 2012, Nature Protocols. RNA-seq was performed on riboMinus-extracted RNA. Libraries were prepared using manufacturer's recommendations with TruSeq adapters or Illumina adapters.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

53826161

Reads aligned (%)

98.7

Duplicates removed (%)

10.8

Number of peaks

2480 (qval < 1E-05)

hg19

Number of total reads

53826161

Reads aligned (%)

98.4

Duplicates removed (%)

11.3

Number of peaks

2509 (qval < 1E-05)