Illumina HiSeq 2500 paired end sequencing; RNAseq of human cell line RPCI-WM1 comparing artificial PRDM1-targeting miRNA to non-targeting control, and comparing Tazemetostat treatment to DMSO. ChIPseq for the factors BLIMP1 and H3K27me3 in the RPCI-WM1, OPM-2 and NCI-H929 cell lines, along with ChIPseq for EZH2 in the NCI-H929 cell line.
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Blood
Cell type
RPCI-WM1
NA
NA
Attributes by original data submitter
Sample
ENA first public
2019-05-08
ENA last update
2019-03-05
ENA-CHECKLIST
ERC000011
External Id
SAMEA5396134
INSDC center alias
Department of Anatomy, University of Iceland
INSDC center name
Department of Anatomy, University of Iceland
INSDC first public
2019-05-08T04:04:30Z
INSDC last update
2019-03-05T15:38:44Z
INSDC status
public
Submitter Id
E-MTAB-7739:RPCI-WM1 BLIMP1 ChIP-1
broker name
ArrayExpress
cell line
RPCI-WM1
cell type
lymphocyte
common name
human
developmental stage
adult
disease
Waldenstrom macroglobulinemia
genotype
wild type genotype
organism part
lymph node
sample name
E-MTAB-7739:RPCI-WM1 BLIMP1 ChIP-1
Sequenced DNA Library
library_name
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library_strategy
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library_source
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library_selection
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library_construction_protocol
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Sequencing Platform
instrument_model
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cycle_sequence
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cycle_count
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flow_sequence
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flow_count
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key_sequence
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