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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Epitope tags
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
ERX320412
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Epitope tags
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
ES
ArrayExpress-GrowthCondition
GMEM+lif
ArrayExpress-Immunoprecipitate
flag
ArrayExpress-Species
Mus Musculus
ENA first public
2013-09-30
ENA last update
2018-03-08
External Id
SAMEA1976240
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-09-30T13:55:48Z
INSDC last update
2018-03-08T15:32:50Z
INSDC status
public
Submitter Id
con2-sc-2011-10-20T10:01:32Z-1290214
common name
house mouse
sample description
mouse ChIP DNA
sample name
con2-sc-2011-10-20T10:01:32Z-1290214
Sequenced DNA Library
library_name
3899096
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
29913191
Reads aligned (%)
95.3
Duplicates removed (%)
38.7
Number of peaks
437 (qval < 1E-05)
mm9
Number of total reads
29913191
Reads aligned (%)
95.2
Duplicates removed (%)
39.1
Number of peaks
396 (qval < 1E-05)
Base call quality data from
DBCLS SRA