ERX320409
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
ES
ArrayExpress-GrowthCondition
GMEM+lif
ArrayExpress-Immunoprecipitate
flag
ArrayExpress-Species
Mus Musculus
ENA first public
2013-09-30
ENA last update
2018-03-08
External Id
SAMEA1976239
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-09-30T13:55:48Z
INSDC last update
2018-03-08T15:32:50Z
INSDC status
public
Submitter Id
wz1-sc-2011-10-20T10:01:28Z-1290211
common name
house mouse
sample description
mouse ChIP DNA
sample name
wz1-sc-2011-10-20T10:01:28Z-1290211

Sequenced DNA Library

library_name
3899093
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30792547
Reads aligned (%)
91.8
Duplicates removed (%)
39.4
Number of peaks
1182 (qval < 1E-05)

mm9

Number of total reads
30792547
Reads aligned (%)
91.6
Duplicates removed (%)
39.6
Number of peaks
1144 (qval < 1E-05)

Base call quality data from DBCLS SRA