ERX3133479
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-PHENOTYPE
WT
ArrayExpress-SEX
male
ArrayExpress-SPECIES
Mus musculus
ArrayExpress-STRAIN_OR_LINE
E14
ENA first public
2019-01-15
ENA last update
2017-06-28
ENA-CHECKLIST
ERC000011
External Id
SAMEA104144062
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2019-01-15T17:03:11Z
INSDC last update
2017-06-28T12:08:50Z
INSDC status
public
Submitter Id
a4aa3976-5a54-11e7-85d3-68b599768938
common name
house mouse
gender
male
phenotype
WT
sample name
a4aa3976-5a54-11e7-85d3-68b599768938
subject id
2001STDY6993189

Sequenced DNA Library

library_name
NT1105730S
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27850731
Reads aligned (%)
97.9
Duplicates removed (%)
10.8
Number of peaks
4825 (qval < 1E-05)

mm9

Number of total reads
27850731
Reads aligned (%)
97.7
Duplicates removed (%)
10.8
Number of peaks
4840 (qval < 1E-05)

Base call quality data from DBCLS SRA