Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
LY2
NA
NA

Attributes by original data submitter

Sample

ENA first public
2014-10-21
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2177955
INSDC center alias
CRUK
INSDC center name
CRUK
INSDC first public
2014-10-21T17:04:38Z
INSDC last update
2018-03-08T16:43:10Z
INSDC status
public
Submitter Id
E-MTAB-1865:LY2
broker name
ArrayExpress
cell line
LY2
cell type
epithelial cell
common name
human
sample name
E-MTAB-1865:LY2
sex
female
specimen with known storage state
frozen specimen

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
27955263
Reads aligned (%)
99.1
Duplicates removed (%)
13.0
Number of peaks
646 (qval < 1E-05)

hg19

Number of total reads
27955263
Reads aligned (%)
98.4
Duplicates removed (%)
14.0
Number of peaks
795 (qval < 1E-05)

Base call quality data from DBCLS SRA