Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
LY2
NA
NA

Attributes by original data submitter

Sample

ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2014-10-21T17:04:38Z
ENA-LAST-UPDATE
2018-03-08T16:43:10Z
External Id
SAMEA2177955
INSDC center name
CRUK
INSDC first public
2014-10-21T17:04:38Z
INSDC last update
2018-03-08T16:43:10Z
INSDC status
public
Submitter Id
E-MTAB-1865:LY2
broker name
ArrayExpress
cell line
LY2
cell type
epithelial cell
common name
human
sample name
E-MTAB-1865:LY2
scientific_name
Homo sapiens
sex
female
specimen with known storage state
frozen specimen

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
31833800
Reads aligned (%)
98.6
Duplicates removed (%)
16.5
Number of peaks
51258 (qval < 1E-05)

hg19

Number of total reads
31833800
Reads aligned (%)
98.1
Duplicates removed (%)
17.4
Number of peaks
52951 (qval < 1E-05)

Base call quality data from DBCLS SRA