Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Digestive tract

Cell type

LoVo

Primary Tissue

Colon

Tissue Diagnosis

Adenocarcinoma

Sample

ENA-CHECKLIST

ERC000011

ENA-FIRST-PUBLIC

2013-08-29

ENA-LAST-UPDATE

2013-08-28

External Id

SAMEA2189706

INSDC center alias

KI-BN

INSDC center name

Department of Biosciences and Nutrition, Karolinska Institutet, Sweden

INSDC first public

2013-08-29T17:07:14Z

INSDC last update

2013-08-28T09:55:06Z

INSDC status

public

Submitter Id

DHS_S_phase2

cell_line

LoVo

cell_type

epithelial

common name

human

culture_collection

ATCC® CCL-229™

sample name

DHS_S_phase2

sex

male

tissue_type

colon; derived from metastatic site: left supraclavicular region

Sequenced DNA Library

library_name

LoVo_DHS_Sphase

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

175861224

Reads aligned (%)

69.6

Duplicates removed (%)

10.7

Number of peaks

12934 (qval < 1E-05)

hg19

Number of total reads

175861224

Reads aligned (%)

68.6

Duplicates removed (%)

13.4

Number of peaks

13372 (qval < 1E-05)