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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Glia
ATCC
MeSH
RIKEN BRC
ERX304131
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Neural
Cell type
Glia
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
Glia
ArrayExpress-DevelopmentalStage
Adult
ArrayExpress-Genotype
Wildtype
ArrayExpress-OrganismPart
Brain
ArrayExpress-Phenotype
wildtype
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2013-08-27
ENA last update
2018-03-08
External Id
SAMEA2059699
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-08-27T09:22:57Z
INSDC last update
2018-03-08T16:20:52Z
INSDC status
public
Submitter Id
m_5mC_Glia_2-sc-2013-03-19T13:56:11Z-1599117
common name
house mouse
sample description
gDNA from FACS sorted glia
sample name
m_5mC_Glia_2-sc-2013-03-19T13:56:11Z-1599117
strain
Bl6
Sequenced DNA Library
library_name
7017609
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
82978375
Reads aligned (%)
5.2
Duplicates removed (%)
3.5
Number of peaks
1363 (qval < 1E-05)
mm9
Number of total reads
82978375
Reads aligned (%)
4.7
Duplicates removed (%)
2.3
Number of peaks
1756 (qval < 1E-05)
Base call quality data from
DBCLS SRA