ERX3015324
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CELL_TYPE
HEPG2
ArrayExpress-IMMUNOPRECIPITATE
H3K27me3
ArrayExpress-SPECIES
Homo sapien
ENA first public
2018-12-18
ENA last update
2018-10-29
ENA-CHECKLIST
ERC000011
External Id
SAMEA5048458
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-12-18T17:02:55Z
INSDC last update
2018-10-29T09:58:00Z
INSDC status
public
Submitter Id
e7bfa9f0-bdef-11e6-bf85-68b59976a384
common name
human
sample name
e7bfa9f0-bdef-11e6-bf85-68b59976a384
subject id
dg_cttv0206650339

Sequenced DNA Library

library_name
NT896272N
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37866214
Reads aligned (%)
97.0
Duplicates removed (%)
37.5
Number of peaks
1031 (qval < 1E-05)

hg19

Number of total reads
37866214
Reads aligned (%)
95.8
Duplicates removed (%)
38.8
Number of peaks
494 (qval < 1E-05)

Base call quality data from DBCLS SRA