ERX3015321
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CELL_TYPE
HEPG2
ArrayExpress-IMMUNOPRECIPITATE
H3K4me3
ArrayExpress-SPECIES
Homo sapien
ENA first public
2018-12-18
ENA last update
2018-10-29
ENA-CHECKLIST
ERC000011
External Id
SAMEA5048454
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-12-18T17:02:55Z
INSDC last update
2018-10-29T09:57:58Z
INSDC status
public
Submitter Id
e79edb80-bdef-11e6-bf85-68b59976a384
common name
human
sample name
e79edb80-bdef-11e6-bf85-68b59976a384
subject id
dg_cttv0206650335

Sequenced DNA Library

library_name
NT896268R
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16480876
Reads aligned (%)
84.8
Duplicates removed (%)
77.9
Number of peaks
7656 (qval < 1E-05)

hg19

Number of total reads
16480876
Reads aligned (%)
84.5
Duplicates removed (%)
78.3
Number of peaks
7545 (qval < 1E-05)

Base call quality data from DBCLS SRA