Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ENA first public
2018-11-23
ENA last update
2018-11-13
ENA-CHECKLIST
ERC000011
External Id
SAMEA5084579
INSDC center alias
WELLCOME TRUST SANGER INSTITUTE
INSDC center name
WELLCOME TRUST SANGER INSTITUTE
INSDC first public
2018-11-23T17:03:11Z
INSDC last update
2018-11-13T15:56:02Z
INSDC status
public
Submitter Id
E-MTAB-61651542124302:EB_Day4_rep1
broker name
ArrayExpress
cell line
E14-ES
cell type
embryonic stem cell
common name
house mouse
disease
normal
genotype
Dpf2-FLAG
growth condition
3D culture
organism part
inner cell mass
sample name
E-MTAB-61651542124302:EB_Day4_rep1

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
123118624
Reads aligned (%)
96.4
Duplicates removed (%)
22.5
Number of peaks
39698 (qval < 1E-05)

mm9

Number of total reads
123118624
Reads aligned (%)
96.2
Duplicates removed (%)
22.5
Number of peaks
39441 (qval < 1E-05)

Base call quality data from DBCLS SRA