ERX2868893
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Liver
Cell type
HuH-7
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

ArrayExpress-CellType
HUH7
ArrayExpress-Immunoprecipitate
H3K4me3
ArrayExpress-Species
Homo sapiens
ENA first public
2018-10-30
ENA last update
2018-10-29
ENA-CHECKLIST
ERC000011
External Id
SAMEA5048447
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T14:14:49Z
INSDC last update
2018-10-29T09:57:42Z
INSDC status
public
Submitter Id
92753690-15e8-11e6-93bc-68b59976a384
common name
human
sample description
H3K4me3 ChIPmentation from ~500k HUH7_2D_BR1 cells
sample name
92753690-15e8-11e6-93bc-68b59976a384

Sequenced DNA Library

library_name
NT789440M
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12139763
Reads aligned (%)
89.5
Duplicates removed (%)
25.0
Number of peaks
26451 (qval < 1E-05)

hg19

Number of total reads
12139763
Reads aligned (%)
89.2
Duplicates removed (%)
25.2
Number of peaks
26293 (qval < 1E-05)

Base call quality data from DBCLS SRA