ERX2868883
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
Homo sapiens
ENA first public
2018-10-30
ENA last update
2018-10-29
ENA-CHECKLIST
ERC000011
External Id
SAMEA5048387
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T14:14:43Z
INSDC last update
2018-10-29T09:54:09Z
INSDC status
public
Submitter Id
c910f5dc-5fc4-11e7-aeaa-68b59976a384
common name
human
sample description
Toledo_ATAC_BR1
sample name
c910f5dc-5fc4-11e7-aeaa-68b59976a384

Sequenced DNA Library

library_name
NT1106769O
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
141526646
Reads aligned (%)
78.3
Duplicates removed (%)
27.3
Number of peaks
8158 (qval < 1E-05)

hg19

Number of total reads
141526646
Reads aligned (%)
78.0
Duplicates removed (%)
27.8
Number of peaks
7948 (qval < 1E-05)

Base call quality data from DBCLS SRA