ERX2868855
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-SPECIES
Homo sapiens
ENA first public
2018-10-30
ENA last update
2018-10-29
ENA-CHECKLIST
ERC000011
External Id
SAMEA5048435
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T14:14:43Z
INSDC last update
2018-10-29T09:56:54Z
INSDC status
public
Submitter Id
affd4d20-3e14-11e6-a459-68b59976a384
common name
human
sample name
affd4d20-3e14-11e6-a459-68b59976a384
subject id
dg_cttv0206461805

Sequenced DNA Library

library_name
NT807214I
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
118726942
Reads aligned (%)
80.3
Duplicates removed (%)
61.0
Number of peaks
16917 (qval < 1E-05)

hg19

Number of total reads
118726942
Reads aligned (%)
80.2
Duplicates removed (%)
61.2
Number of peaks
16691 (qval < 1E-05)

Base call quality data from DBCLS SRA