ERX2868828
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-SPECIES
Homo sapiens
ENA first public
2018-10-30
ENA last update
2018-10-29
ENA-CHECKLIST
ERC000011
External Id
SAMEA5048404
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T14:14:43Z
INSDC last update
2018-10-29T09:56:41Z
INSDC status
public
Submitter Id
913ac980-2bdb-11e6-ba54-68b599768938
common name
human
sample name
913ac980-2bdb-11e6-ba54-68b599768938
subject id
dg_cttv0206435307

Sequenced DNA Library

library_name
NT796846A
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
111923203
Reads aligned (%)
73.6
Duplicates removed (%)
58.1
Number of peaks
68431 (qval < 1E-05)

hg19

Number of total reads
111923203
Reads aligned (%)
73.4
Duplicates removed (%)
58.3
Number of peaks
68047 (qval < 1E-05)

Base call quality data from DBCLS SRA