ERX2868718
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CELL_TYPE
HEPG2
ArrayExpress-IMMUNOPRECIPITATE
Input
ArrayExpress-SPECIES
Homo sapien
ENA first public
2018-10-30
ENA last update
2018-10-29
ENA-CHECKLIST
ERC000011
External Id
SAMEA5048616
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:45Z
INSDC last update
2018-10-29T10:00:51Z
INSDC status
public
Submitter Id
bccc82b0-d3f0-11e6-98fc-3c4a9275d6c8
common name
human
sample name
bccc82b0-d3f0-11e6-98fc-3c4a9275d6c8
subject id
dg_cttv0206671973

Sequenced DNA Library

library_name
DN476236O:A1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
69741003
Reads aligned (%)
98.4
Duplicates removed (%)
3.9
Number of peaks
616 (qval < 1E-05)

hg19

Number of total reads
69741003
Reads aligned (%)
96.7
Duplicates removed (%)
3.8
Number of peaks
698 (qval < 1E-05)

Base call quality data from DBCLS SRA