Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CELL_TYPE
THP1
ArrayExpress-IMMUNOPRECIPITATE
CTCF
ArrayExpress-SPECIES
Homo sapiens
ENA first public
2018-10-30
ENA last update
2018-10-29
ENA-CHECKLIST
ERC000011
External Id
SAMEA5048593
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:45Z
INSDC last update
2018-10-29T10:00:42Z
INSDC status
public
Submitter Id
18edee40-6082-11e6-821c-3c4a9275d6c8
common name
human
sample name
18edee40-6082-11e6-821c-3c4a9275d6c8
subject id
dg_cttv0206538412

Sequenced DNA Library

library_name
DN466158M:D6
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
43854589
Reads aligned (%)
184.4
Duplicates removed (%)
5.9
Number of peaks
42831 (qval < 1E-05)

hg38

Number of total reads
43854589
Reads aligned (%)
186.4
Duplicates removed (%)
5.6
Number of peaks
43987 (qval < 1E-05)

Base call quality data from DBCLS SRA