ERX2868604
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CELL_TYPE
U937
ArrayExpress-IMMUNOPRECIPITATE
H3K4me3
ArrayExpress-SPECIES
Homo sapiens
ENA first public
2018-10-30
ENA last update
2018-10-29
ENA-CHECKLIST
ERC000011
External Id
SAMEA5048534
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:45Z
INSDC last update
2018-10-29T10:00:20Z
INSDC status
public
Submitter Id
f0e8cc10-57be-11e6-9a3d-3c4a9275d6c8
common name
human
sample name
f0e8cc10-57be-11e6-9a3d-3c4a9275d6c8
subject id
dg_cttv0206497397

Sequenced DNA Library

library_name
DN465661S:C4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43949482
Reads aligned (%)
99.2
Duplicates removed (%)
3.0
Number of peaks
9614 (qval < 1E-05)

hg19

Number of total reads
43949482
Reads aligned (%)
98.5
Duplicates removed (%)
2.9
Number of peaks
29260 (qval < 1E-05)

Base call quality data from DBCLS SRA