ERX2839639
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-SPECIES
Mus musculus
ENA first public
2018-10-02
ENA last update
2017-09-22
ENA-CHECKLIST
ERC000011
External Id
SAMEA104313039
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-02T17:03:47Z
INSDC last update
2017-09-22T08:25:38Z
INSDC status
public
Submitter Id
dab6e97e-8989-11e7-a2a6-68b59976a384
common name
house mouse
sample name
dab6e97e-8989-11e7-a2a6-68b59976a384
subject id
1992STDY7079432

Sequenced DNA Library

library_name
NT1143902J
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Bisulphate qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27149616
Reads aligned (%)
3.3
Duplicates removed (%)
9.3
Number of peaks
242 (qval < 1E-05)

mm9

Number of total reads
27149616
Reads aligned (%)
3.2
Duplicates removed (%)
9.0
Number of peaks
223 (qval < 1E-05)

Base call quality data from DBCLS SRA