Antigen

Antigen Class

No description

Antigen

NA

Cell type

Cell type Class

Neural

Cell type

Brain

MeSH Description

The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Sample

ArrayExpress-CellType

total brain

ArrayExpress-DevelopmentalStage

postnatal

ArrayExpress-Genotype

DNMT1 floxed

ArrayExpress-OrganismPart

Brain

ArrayExpress-Phenotype

wildtype

ArrayExpress-Sex

male

ArrayExpress-Species

Mus musculus

ENA first public

2013-06-20

ENA last update

2018-03-08

External Id

SAMEA1920526

INSDC center alias

SC

INSDC center name

Wellcome Sanger Institute

INSDC first public

2013-06-20T09:14:32Z

INSDC last update

2018-03-08T16:18:04Z

INSDC status

public

Submitter Id

m_910_1_DNMT1_wt-sc-2013-02-26T10:26:07Z-1576986

common name

house mouse

sample description

Total cDNA from brain

sample name

m_910_1_DNMT1_wt-sc-2013-02-26T10:26:07Z-1576986

strain

129SV/Bl6 mix

Sequenced DNA Library

library_name

6804147

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

qPCR only

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

28023669

Reads aligned (%)

86.5

Duplicates removed (%)

26.2

Number of peaks

14212 (qval < 1E-05)

mm9

Number of total reads

28023669

Reads aligned (%)

86.5

Duplicates removed (%)

26.2

Number of peaks

14206 (qval < 1E-05)