ERX2757914
Illumina HiSeq 4000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-SPECIES
Homo sapiens
ENA first public
2018-08-21
ENA last update
2017-08-10
ENA-CHECKLIST
ERC000011
External Id
SAMEA104208739
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-08-21T17:03:29Z
INSDC last update
2017-08-10T10:25:16Z
INSDC status
public
Submitter Id
1cad65be-7239-11e7-9a30-68b599768938
common name
human
sample name
1cad65be-7239-11e7-9a30-68b599768938
subject id
LCL-ATAC7037110

Sequenced DNA Library

library_name
NT1121211R
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
55591270
Reads aligned (%)
91.4
Duplicates removed (%)
52.1
Number of peaks
35278 (qval < 1E-05)

hg19

Number of total reads
55591270
Reads aligned (%)
83.8
Duplicates removed (%)
53.3
Number of peaks
36612 (qval < 1E-05)

Base call quality data from DBCLS SRA