ERX2693514
Illumina HiSeq 4000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

ENA first public
2018-08-13
ENA last update
2018-07-02
ENA-CHECKLIST
ERC000011
External Id
SAMEA4773893
INSDC center alias
ED
INSDC center name
University of Edinburgh
INSDC first public
2018-08-13T17:03:08Z
INSDC last update
2018-07-02T09:09:43Z
INSDC status
public
Submitter Id
GFInput1
cell type
dorsal telencephalon
common name
house mouse
dev stage
E12.5
sample name
GFInput1
tissue type
dorsal telencephalon

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext Ultra ChIPseq

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
124862872
Reads aligned (%)
91.0
Duplicates removed (%)
30.5
Number of peaks
73654 (qval < 1E-05)

mm9

Number of total reads
124862872
Reads aligned (%)
90.8
Duplicates removed (%)
31.1
Number of peaks
79414 (qval < 1E-05)

Base call quality data from DBCLS SRA