ERX2636540
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA first public
2020-01-06
ENA last update
2018-06-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA4717404
INSDC center alias
Max Planck Institute for Molecular Genetics
INSDC center name
Max Planck Institute for Molecular Genetics
INSDC first public
2020-01-06T04:04:17Z
INSDC last update
2018-06-08T13:56:02Z
INSDC status
public
Submitter Id
HAL01_FLAG_ChIP_H3K4me1_Rep1
common name
human
sample name
HAL01_FLAG_ChIP_H3K4me1_Rep1

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
TruSeq stranded total RNA library prep kit with Ribo-Zero Human/Mouse/Rat (Illumina)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19934009
Reads aligned (%)
99.0
Duplicates removed (%)
7.2
Number of peaks
29107 (qval < 1E-05)

hg19

Number of total reads
19934009
Reads aligned (%)
98.5
Duplicates removed (%)
7.3
Number of peaks
28952 (qval < 1E-05)

Base call quality data from DBCLS SRA