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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
ERX2604586
Illumina HiSeq 4000 sequencing; Transcription factor binding and epigenetic modifications during NuRD complex induction
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
ENA first public
2018-05-31
ENA last update
2018-05-21
ENA-CHECKLIST
ERC000011
External Id
SAMEA4671560
INSDC center alias
University of Cambridge
INSDC center name
University of Cambridge
INSDC first public
2018-05-31T17:02:01Z
INSDC last update
2018-05-21T17:01:05Z
INSDC status
public
Submitter Id
E-MTAB-6804:8h_H3K27ac_R1
broker name
ArrayExpress
cell type
embryonic stem cell
common name
house mouse
genotype
Mbd3 inducible
sample name
E-MTAB-6804:8h_H3K27ac_R1
strain
129/Ola
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
32243483
Reads aligned (%)
97.7
Duplicates removed (%)
10.1
Number of peaks
30844 (qval < 1E-05)
mm9
Number of total reads
32243483
Reads aligned (%)
97.6
Duplicates removed (%)
10.2
Number of peaks
30877 (qval < 1E-05)
Base call quality data from
DBCLS SRA