Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Liver

Cell type

Hepatocytes

MeSH Description

The main structural component of the LIVER. They are specialized EPITHELIAL CELLS that are organized into interconnected plates called lobules.

Sample

DISEASE_ONTOLOGY_URI

C3898900

DONOR_AGE_UNIT

week

DONOR_LIFE_STAGE

adult

ENA first public

2018-06-11

ENA last update

2019-05-20

ENA-CHECKLIST

ERC000026

External Id

SAMEA1064192

INSDC center alias

DKFZ

INSDC center name

German Cancer Research Center (DKFZ), Heidelberg, Germany

INSDC first public

2018-06-11T17:02:58Z

INSDC last update

2019-05-20T15:37:54Z

INSDC status

public

ORIGIN_SAMPLE

liver

SAMPLE_ONTOLOGY_URI

http://purl.obolibrary.org/obo/CL_0000182

Submitter Id

42_Mf02_LiHe_Ct

VALIDATED_AGAINST_METADATA_SPEC

1.0/SAMPLE

biomaterial provider

Pharmazeutische Biologie, UDS, Saarbrücken / IfADo, Dortmund

biomaterial type

Primary Cell

cell type

hepatocyte

common name

house mouse

disease

healthy

donor age

9

donor id

42_Mf02

donor sex

female

gender

female

phenotype

lean

sample name

42_Mf02_LiHe_Ct

Sequenced DNA Library

library_name

unspecified

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

34444895

Reads aligned (%)

96.3

Duplicates removed (%)

65.2

Number of peaks

16731 (qval < 1E-05)

mm9

Number of total reads

34444895

Reads aligned (%)

96.2

Duplicates removed (%)

65.3

Number of peaks

16684 (qval < 1E-05)