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For mm10
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: White adipocytes
ATCC
MeSH
RIKEN BRC
ERX2579918
Illumina HiSeq 2500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Adipocyte
Cell type
White adipocytes
NA
NA
Attributes by original data submitter
Sample
DISEASE_ONTOLOGY_URI
C3898900
DONOR_AGE_UNIT
week
DONOR_LIFE_STAGE
adult
ENA first public
2018-06-11
ENA last update
2019-05-20
ENA-CHECKLIST
ERC000026
External Id
SAMEA1064213
INSDC center alias
DKFZ
INSDC center name
German Cancer Research Center (DKFZ), Heidelberg, Germany
INSDC first public
2018-06-11T17:02:58Z
INSDC last update
2019-05-20T15:38:18Z
INSDC status
public
ORIGIN_SAMPLE
white adipose tissue
SAMPLE_ONTOLOGY_URI
http://purl.obolibrary.org/obo/CL_0000448
Submitter Id
44_Mm01_WeAd_C2
VALIDATED_AGAINST_METADATA_SPEC
1.0/SAMPLE
biomaterial provider
MPI Freiburg in-house colony
biomaterial type
Primary Cell
cell type
white adipocyte
common name
house mouse
disease
healthy
donor age
10
donor id
44_Mm01
donor sex
male
gender
male
phenotype
lean
sample name
44_Mm01_WeAd_C2
Sequenced DNA Library
library_name
unspecified
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
15171049
Reads aligned (%)
97.3
Duplicates removed (%)
9.4
Number of peaks
6432 (qval < 1E-05)
mm9
Number of total reads
15171049
Reads aligned (%)
97.2
Duplicates removed (%)
9.4
Number of peaks
6394 (qval < 1E-05)
Base call quality data from
DBCLS SRA