ERX2579916
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Adipocyte
Cell type
White adipocytes
NA
NA

Attributes by original data submitter

Sample

DISEASE_ONTOLOGY_URI
C3898900
DONOR_AGE_UNIT
week
DONOR_LIFE_STAGE
adult
ENA first public
2018-06-11
ENA last update
2019-05-20
ENA-CHECKLIST
ERC000026
External Id
SAMEA1064213
INSDC center alias
DKFZ
INSDC center name
German Cancer Research Center (DKFZ), Heidelberg, Germany
INSDC first public
2018-06-11T17:02:58Z
INSDC last update
2019-05-20T15:38:18Z
INSDC status
public
ORIGIN_SAMPLE
white adipose tissue
SAMPLE_ONTOLOGY_URI
http://purl.obolibrary.org/obo/CL_0000448
Submitter Id
44_Mm01_WeAd_C2
VALIDATED_AGAINST_METADATA_SPEC
1.0/SAMPLE
biomaterial provider
MPI Freiburg in-house colony
biomaterial type
Primary Cell
cell type
white adipocyte
common name
house mouse
disease
healthy
donor age
10
donor id
44_Mm01
donor sex
male
gender
male
phenotype
lean
sample name
44_Mm01_WeAd_C2

Sequenced DNA Library

library_name
unspecified
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14974024
Reads aligned (%)
97.4
Duplicates removed (%)
9.3
Number of peaks
6404 (qval < 1E-05)

mm9

Number of total reads
14974024
Reads aligned (%)
97.3
Duplicates removed (%)
9.3
Number of peaks
6364 (qval < 1E-05)

Base call quality data from DBCLS SRA