ERX2543592
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-SEX
female
ArrayExpress-SPECIES
Mus musculus
ENA first public
2018-04-17
ENA last update
2017-03-17
ENA-CHECKLIST
ERC000011
External Id
SAMEA103918585
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-04-17T17:02:53Z
INSDC last update
2017-03-17T10:21:52Z
INSDC status
public
Submitter Id
1b808710-0a57-11e7-a20f-68b59976a384
common name
house mouse
gender
female
sample name
1b808710-0a57-11e7-a20f-68b59976a384
subject id
2995STDY6773386

Sequenced DNA Library

library_name
NT990893S
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12799954
Reads aligned (%)
73.4
Duplicates removed (%)
10.5
Number of peaks
18463 (qval < 1E-05)

mm9

Number of total reads
12799954
Reads aligned (%)
73.3
Duplicates removed (%)
10.6
Number of peaks
18441 (qval < 1E-05)

Base call quality data from DBCLS SRA