ERX2543576
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-SEX
female
ArrayExpress-SPECIES
Mus musculus
ENA first public
2018-04-17
ENA last update
2017-03-17
ENA-CHECKLIST
ERC000011
External Id
SAMEA103918581
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-04-17T17:02:53Z
INSDC last update
2017-03-17T10:21:48Z
INSDC status
public
Submitter Id
1aad7fa0-0a57-11e7-a20f-68b59976a384
common name
house mouse
gender
female
sample name
1aad7fa0-0a57-11e7-a20f-68b59976a384
subject id
2995STDY6773382

Sequenced DNA Library

library_name
NT990889W
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10000896
Reads aligned (%)
89.5
Duplicates removed (%)
8.5
Number of peaks
15518 (qval < 1E-05)

mm9

Number of total reads
10000896
Reads aligned (%)
89.4
Duplicates removed (%)
8.6
Number of peaks
15486 (qval < 1E-05)

Base call quality data from DBCLS SRA