ERX245546
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
mouse ES cells
ArrayExpress-Compound
Control
ArrayExpress-Genotype
Cfp1 -/-
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2013-05-07
ENA last update
2018-03-08
External Id
SAMEA1886458
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-05-07T10:05:23Z
INSDC last update
2018-03-08T16:06:09Z
INSDC status
public
Submitter Id
m_Cfp1null_RNA_2-sc-2012-10-30T15:20:54Z-1505504
common name
house mouse
sample description
RNA-Seq Library PCR (cDNA from rRNA depleted total mouse ES cells RNA)
sample name
m_Cfp1null_RNA_2-sc-2012-10-30T15:20:54Z-1505504

Sequenced DNA Library

library_name
6108250
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
33864798
Reads aligned (%)
85.7
Duplicates removed (%)
34.6
Number of peaks
15717 (qval < 1E-05)

mm9

Number of total reads
33864798
Reads aligned (%)
85.3
Duplicates removed (%)
34.6
Number of peaks
15815 (qval < 1E-05)

Base call quality data from DBCLS SRA