ERX245538
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Neural
Cell type
Glia
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Glia
ArrayExpress-DevelopmentalStage
Adult
ArrayExpress-Genotype
Wildtype
ArrayExpress-OrganismPart
Brain
ArrayExpress-Phenotype
wildtype
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2013-05-07
ENA last update
2018-03-08
External Id
SAMEA1886426
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-05-07T10:05:23Z
INSDC last update
2018-03-08T16:00:48Z
INSDC status
public
Submitter Id
m_Glia_5hmC-sc-2012-10-22T10:35:52Z-1500511
common name
house mouse
sample description
gDNA from FACS sorted glia
sample name
m_Glia_5hmC-sc-2012-10-22T10:35:52Z-1500511
strain
Bl6

Sequenced DNA Library

library_name
6081759
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
38300320
Reads aligned (%)
3.3
Duplicates removed (%)
3.2
Number of peaks
213 (qval < 1E-05)

mm9

Number of total reads
38300320
Reads aligned (%)
3.2
Duplicates removed (%)
3.2
Number of peaks
204 (qval < 1E-05)

Base call quality data from DBCLS SRA