ERX245521
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9K14ac

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
mouse ES cells
ArrayExpress-Compound
Doxorubicin
ArrayExpress-Dose
1 uM
ArrayExpress-Genotype
Wildtype
ArrayExpress-Immunoprecipitate
Anti H3K9,K14 acetyl, Millipore 06-600
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2013-05-07
ENA last update
2018-03-08
External Id
SAMEA1886455
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-05-07T10:05:23Z
INSDC last update
2018-03-08T16:05:55Z
INSDC status
public
Submitter Id
m_wtES_Dox_H3Ac_1-sc-2012-10-31T12:05:50Z-1505615
common name
house mouse
sample description
Library PCR form ChIP
sample name
m_wtES_Dox_H3Ac_1-sc-2012-10-31T12:05:50Z-1505615

Sequenced DNA Library

library_name
6108914
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19320897
Reads aligned (%)
98.2
Duplicates removed (%)
12.0
Number of peaks
15832 (qval < 1E-05)

mm9

Number of total reads
19320897
Reads aligned (%)
98.0
Duplicates removed (%)
12.2
Number of peaks
15749 (qval < 1E-05)

Base call quality data from DBCLS SRA