Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

ENA first public
2013-06-03
ENA last update
2018-03-08
External Id
SAMEA1906586
INSDC center alias
Cambridge University
INSDC center name
Cambridge University
INSDC first public
2013-06-03T13:10:15Z
INSDC last update
2018-03-08T16:23:06Z
INSDC status
public
Submitter Id
E-MTAB-1579:Mmu1
broker name
ArrayExpress
common name
house mouse
developmental stage
adult
organism part
liver
sample name
E-MTAB-1579:Mmu1
sex
male
strain
C57BL/6

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
2258676
Reads aligned (%)
85.8
Duplicates removed (%)
5.1
Number of peaks
428 (qval < 1E-05)

mm9

Number of total reads
2258676
Reads aligned (%)
85.7
Duplicates removed (%)
5.4
Number of peaks
415 (qval < 1E-05)

Base call quality data from DBCLS SRA