ERX2361218
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
ES
ArrayExpress-Sex
female
ArrayExpress-Species
mus musculus
ENA first public
2018-02-20
ENA last update
2017-02-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA80443168
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-02-20T17:02:43Z
INSDC last update
2017-02-08T09:56:16Z
INSDC status
public
Submitter Id
954b2a60-de50-11e6-9fca-68b599768938
common name
house mouse
sample description
ChIPseq library IP
sample name
954b2a60-de50-11e6-9fca-68b599768938

Sequenced DNA Library

library_name
NT936752A
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
18604778
Reads aligned (%)
97.7
Duplicates removed (%)
14.8
Number of peaks
165 (qval < 1E-05)

mm9

Number of total reads
18604778
Reads aligned (%)
97.5
Duplicates removed (%)
15.0
Number of peaks
142 (qval < 1E-05)

Base call quality data from DBCLS SRA