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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
ERX2361202
Illumina HiSeq 2500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
ES
ArrayExpress-Sex
female
ArrayExpress-Species
mus musculus
ENA first public
2018-02-20
ENA last update
2017-02-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA80443168
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-02-20T17:02:43Z
INSDC last update
2017-02-08T09:56:16Z
INSDC status
public
Submitter Id
954b2a60-de50-11e6-9fca-68b599768938
common name
house mouse
sample description
ChIPseq library IP
sample name
954b2a60-de50-11e6-9fca-68b599768938
Sequenced DNA Library
library_name
NT936752A
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
18684284
Reads aligned (%)
97.6
Duplicates removed (%)
14.8
Number of peaks
167 (qval < 1E-05)
mm9
Number of total reads
18684284
Reads aligned (%)
97.5
Duplicates removed (%)
15.0
Number of peaks
139 (qval < 1E-05)
Base call quality data from
DBCLS SRA