Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Epiblast
NA
NA

Attributes by original data submitter

Sample

ENA-FIRST-PUBLIC
2013-07-17T17:01:01Z
ENA-LAST-UPDATE
2018-03-08T16:21:53Z
External Id
SAMEA2062613
INSDC center name
Biomedical Center, University of Iceland
INSDC first public
2013-07-17T17:01:01Z
INSDC last update
2018-03-08T16:21:53Z
INSDC status
public
Submitter Id
E-MTAB-1600:Culture 1
broker name
ArrayExpress
cell line
P19EC
cell type
epiblast
common name
house mouse
phenotype
wild type
sample name
E-MTAB-1600:Culture 1
scientific_name
Mus musculus
specimen with known storage state
fresh specimen

Sequenced DNA Library

library_name
IP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
P19 embryonal carcinoma cells were cultured in DMEM with 10% fetal calf serum. The mouse P19ECs were obtained from ATCC and were cultured in DMEM, 10% fetal 655 calf serum, 2mM L-glutamine (Gibco) and 50 ug/ml penicillin/streptomycin (Gibco) P19ECs were stably transfected with AP2gamma. Cells were harvested and crosslinked with 1% formaldehyde. Phenol Chloroform extraction Performed ChIP according to: Magnusdottir, E. et al. Epidermal terminal differentiation depends on B lymphocyte912 induced maturation protein-1. Proceedings of the National Academy of Sciences of the United States of America 104, 14988-93 (2007). Libraries were generated using Nugene Ovation Ultralow Library Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
69688525
Reads aligned (%)
43.7
Duplicates removed (%)
75.3
Number of peaks
23231 (qval < 1E-05)

mm9

Number of total reads
69688525
Reads aligned (%)
43.6
Duplicates removed (%)
75.5
Number of peaks
23255 (qval < 1E-05)

Base call quality data from DBCLS SRA