ERX2270597
Illumina HiSeq 2000 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Gonad
Cell type
Sperm
NA
NA

Attributes by original data submitter

Sample

ENA first public
2018-02-10
ENA last update
2017-12-11
ENA-CHECKLIST
ERC000011
External Id
SAMEA104422214
INSDC center alias
MAX PLANCK INSTITUTE OF IMMUNOBIOLOGY AND EPIGENETICS
INSDC center name
MAX PLANCK INSTITUTE OF IMMUNOBIOLOGY AND EPIGENETICS
INSDC first public
2018-02-10T17:01:51Z
INSDC last update
2017-12-11T11:14:19Z
INSDC status
public
Submitter Id
Y248K4me3
common name
house mouse
dev stage
young
exp_mark
H3K4me3
exp_type
ChIPseq
sample name
Y248K4me3
tissue type
sperm

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
35237308
Reads aligned (%)
97.6
Duplicates removed (%)
86.3
Number of peaks
4236 (qval < 1E-05)

mm9

Number of total reads
35237308
Reads aligned (%)
97.4
Duplicates removed (%)
86.4
Number of peaks
4075 (qval < 1E-05)

Base call quality data from DBCLS SRA