Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SOX2

Cell type

Cell type Class
Lung
Cell type
Lung cancer
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Lung
ArrayExpress-DevelopmentalStage
Cancer cells
ArrayExpress-Immunoprecipitate
SOX2
ArrayExpress-OrganismPart
Lung
ArrayExpress-Phenotype
Cancer cells
ArrayExpress-Sex
male
ArrayExpress-Species
Homo sapiens
ENA first public
2017-11-28
ENA last update
2016-10-31
ENA-CHECKLIST
ERC000011
External Id
SAMEA4527696
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2017-11-28T17:02:40Z
INSDC last update
2016-10-31T11:32:15Z
INSDC status
public
Submitter Id
2faccf40-83c1-11e6-ad90-3c4a9275d6c8
common name
human
sample description
LK2_CONT_Sox2
sample name
2faccf40-83c1-11e6-ad90-3c4a9275d6c8

Sequenced DNA Library

library_name
DN468513T:B1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
40711874
Reads aligned (%)
98.1
Duplicates removed (%)
12.4
Number of peaks
1217 (qval < 1E-05)

hg19

Number of total reads
40711874
Reads aligned (%)
97.1
Duplicates removed (%)
12.7
Number of peaks
524 (qval < 1E-05)

Base call quality data from DBCLS SRA