ERX2259403
NextSeq 500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

ENA first public
2018-07-14
ENA last update
2017-11-27
ENA-CHECKLIST
ERC000011
External Id
SAMEA104404305
INSDC center alias
MAX PLANCK INSTITUTE FOR HEART AND LUNG RESEARCH
INSDC center name
MAX PLANCK INSTITUTE FOR HEART AND LUNG RESEARCH
INSDC first public
2018-07-14T17:03:19Z
INSDC last update
2017-11-27T14:41:57Z
INSDC status
public
Submitter Id
Isl1KO-e9.5_2_atac
common name
house mouse
dev stage
embryonic
sample name
Isl1KO-e9.5_2_atac

Sequenced DNA Library

library_name
unspecified
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Libraries were constructed as described in Buenrostro et. al. Nature Methods (2013). doi:10.1038/nmeth.2688

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12193831
Reads aligned (%)
0.0
Duplicates removed (%)
0.0
Number of peaks
2873 (qval < 1E-05)

mm9

Number of total reads
12193831
Reads aligned (%)
0.0
Duplicates removed (%)
0.0
Number of peaks
2855 (qval < 1E-05)

Base call quality data from DBCLS SRA