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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: Embryos
ATCC
MeSH
RIKEN BRC
ERX2259400
NextSeq 500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Embryo
Cell type
Embryos
NA
NA
Attributes by original data submitter
Sample
ENA first public
2018-07-14
ENA last update
2017-11-27
ENA-CHECKLIST
ERC000011
External Id
SAMEA104404302
INSDC center alias
MAX PLANCK INSTITUTE FOR HEART AND LUNG RESEARCH
INSDC center name
MAX PLANCK INSTITUTE FOR HEART AND LUNG RESEARCH
INSDC first public
2018-07-14T17:03:19Z
INSDC last update
2017-11-27T14:41:57Z
INSDC status
public
Submitter Id
Isl1-e9.5_1_atac
common name
house mouse
dev stage
embryonic
sample name
Isl1-e9.5_1_atac
Sequenced DNA Library
library_name
unspecified
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Libraries were constructed as described in Buenrostro et. al. Nature Methods (2013). doi:10.1038/nmeth.2688
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
12913837
Reads aligned (%)
0.0
Duplicates removed (%)
0.1
Number of peaks
6716 (qval < 1E-05)
mm9
Number of total reads
12913837
Reads aligned (%)
0.0
Duplicates removed (%)
0.1
Number of peaks
6761 (qval < 1E-05)
Base call quality data from
DBCLS SRA