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For hg38
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For hg19
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Peak-call (q < 1E-10)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CHD8
wikigenes
PDBj
CellType: Mammary epithelial cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX2242380
Illumina HiSeq 2500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CHD8
Cell type
Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
Mammary Epithelial
ArrayExpress-DevelopmentalStage
Tumour
ArrayExpress-Immunoprecipitate
CHD8
ArrayExpress-Phenotype
TNBC cancer
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2017-10-31
ENA last update
2016-07-12
ENA-CHECKLIST
ERC000011
External Id
SAMEA4075775
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2017-10-31T10:19:10Z
INSDC last update
2016-07-12T16:58:35Z
INSDC status
public
Submitter Id
48e31cc0-d3f5-11e5-88b1-3c4a9275d6c6
common name
human
sample description
CHD8 chipseq
sample name
48e31cc0-d3f5-11e5-88b1-3c4a9275d6c6
Sequenced DNA Library
library_name
DN457801P:B1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
4806786
Reads aligned (%)
96.4
Duplicates removed (%)
38.7
Number of peaks
80 (qval < 1E-05)
hg19
Number of total reads
4806786
Reads aligned (%)
95.7
Duplicates removed (%)
39.2
Number of peaks
79 (qval < 1E-05)
Base call quality data from
DBCLS SRA