ERX211439
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Bone
Cell type
Osteoblasts
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
OSTEOBLASTS
ArrayExpress-Compound
No
ArrayExpress-Genotype
Wildtype
ArrayExpress-OrganismPart
Calvaria
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ArrayExpress-TimePoint
25 hours
ENA first public
2013-03-07
ENA last update
2018-03-08
External Id
SAMEA1711493
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-03-07T09:07:34Z
INSDC last update
2018-03-08T15:58:37Z
INSDC status
public
Submitter Id
Obfoxochip_7-sc-2012-09-25T16:30:54Z-1484245
common name
house mouse
sample description
CHIP DNA from Osteoblasts
sample name
Obfoxochip_7-sc-2012-09-25T16:30:54Z-1484245
strain
C75BL6

Sequenced DNA Library

library_name
6004430
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12147668
Reads aligned (%)
95.4
Duplicates removed (%)
27.7
Number of peaks
153 (qval < 1E-05)

mm9

Number of total reads
12147668
Reads aligned (%)
95.1
Duplicates removed (%)
28.8
Number of peaks
137 (qval < 1E-05)

Base call quality data from DBCLS SRA