Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Osteoblasts
ATCC
MeSH
RIKEN BRC
ERX211436
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Bone
Cell type
Osteoblasts
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
OSTEOBLASTS
ArrayExpress-Compound
MELATONIN
ArrayExpress-Dose
100 nM
ArrayExpress-Genotype
Wildtype
ArrayExpress-OrganismPart
Calvaria
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ArrayExpress-TimePoint
24 hours
ENA first public
2013-03-07
ENA last update
2018-03-08
External Id
SAMEA1711490
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-03-07T09:07:34Z
INSDC last update
2018-03-08T15:58:37Z
INSDC status
public
Submitter Id
Obfoxochip_4-sc-2012-09-25T16:30:51Z-1484242
common name
house mouse
sample description
CHIP DNA from Osteoblasts
sample name
Obfoxochip_4-sc-2012-09-25T16:30:51Z-1484242
strain
C75BL6
Sequenced DNA Library
library_name
6004427
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
15483805
Reads aligned (%)
74.0
Duplicates removed (%)
51.3
Number of peaks
95 (qval < 1E-05)
mm9
Number of total reads
15483805
Reads aligned (%)
73.9
Duplicates removed (%)
51.4
Number of peaks
72 (qval < 1E-05)
Base call quality data from
DBCLS SRA