ERX211435
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Bone
Cell type
Osteoblasts
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
OSTEOBLASTS
ArrayExpress-Compound
MELATONIN
ArrayExpress-Dose
100 nM
ArrayExpress-Genotype
Wildtype
ArrayExpress-OrganismPart
Calvaria
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ArrayExpress-TimePoint
24 hours
ENA first public
2013-03-07
ENA last update
2018-03-08
External Id
SAMEA1711488
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-03-07T09:07:34Z
INSDC last update
2018-03-08T15:57:42Z
INSDC status
public
Submitter Id
Obfoxochip_3-sc-2012-09-25T16:30:51Z-1484241
common name
house mouse
sample description
CHIP DNA from Osteoblasts
sample name
Obfoxochip_3-sc-2012-09-25T16:30:51Z-1484241
strain
C75BL6

Sequenced DNA Library

library_name
6004426
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13073802
Reads aligned (%)
82.5
Duplicates removed (%)
42.0
Number of peaks
93 (qval < 1E-05)

mm9

Number of total reads
13073802
Reads aligned (%)
82.4
Duplicates removed (%)
42.2
Number of peaks
74 (qval < 1E-05)

Base call quality data from DBCLS SRA